COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource

public sequences ready for download!

May 2021 update: we are now at 86,377 sequences with normalized metadata on AWS OpenData!

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About/FAQ

1 Export data

Apart from straight file downloads COVID-19 PubSeq allows for exporting forms and data for other services.

2 SPARQL API

First of all, PubSeq exports a SPARQL endpoint here that allows you do do any query on the data. See this document for examples.

3 REST API

In addition to above flexible SPARQL endpoint - which is essentially is a query REST API - PubSeq exports its own REST API.

4 Export EBI/ENA Forms

Uploading data to EBI/ENA with PubSeq is described here.

To export, first search for an uploaded entry through its identifier:

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