Table of Contents
1 CONTACT and SUPPORT
COVID-19 PubSeq is run by a community of bioinformaticians and software developers working at leading institutes (see sponsors below) with the goal of making online analysis available to everyone. You can talk with us directly in the matrix PubSeq room. We are open to improving tools, work flows and analysis.
1.1 Oxford Nanopore Analysis
We run Oxford Nanopore ourselves. It is an exciting technology because it gives us an accurate SARS-CoV-2 sequencer for a few thousand dollars which can be run in a living room! With PubSeq we aim to make it easy to analyse Nanopore material using our free Cloud infrastructure and the NVIDIA Jetson computer. If you need help in using the online workflows don't hesitate to contact us.
1.2 Data from other sequencers
We accept FASTA sequences of SARS-CoV-2. Simply upload them using the web form and/or REST API. No sign-up required! If you have large scale short read data and require support we can discuss that. We also run Illumina sequencing in several places.
1.3 Professional support
For questions feel free to write directly to Pjotr Prins.